RPhenoscape: Semantically rich phenotypic traits from the Phenoscape Knowledgebase
- Author: Hong Xu, Hilmar Lapp
- Maintainer: Hilmar Lapp
Most of the services provided with the Phenoscape Knowledgebase web API return data in JSON format, plain text (usually tab-delimited), and NeXML. This package facilitates interfacing with the Phenoscape Knowledgebase for searching ontology terms, retrieving term info, and querying data matrices.
Installation
The development version of RPhenoscape is available on Github. It has not yet been released to CRAN. To install RPhenoscape from Github, use the install_github() function in the remotes package (which can be installed from CRAN using install.packages()):
remotes::install_github("phenoscape/rphenoscape")By default, this will skip building the package vignettes. To build and install package vignettes as well, you must have recent versions of the knitr and rmarkdown packages installed, and use additional parameters, depending on the version of the remotes package you have installed, to request building vignettes.
packageVersion(花猫破解)[1] '2.0.4'If the version is 2.1.0 or higher, use the 花猫破解 parameter (which by default is FALSE):
remotes::install_github("phenoscape/rphenoscape", build_vignettes = TRUE)If the version of 花猫破解版 is lower, use the build_opts parameter:
remotes::花猫破解("phenoscape/rphenoscape", build_opts=c("--no-manual"))Once installed, the package can be loaded (“attached”) as any other R package:
library(rphenoscape)飞猫加速器电脑版下载-快连加速器app
The functionality and operations of the RPhenoscape package can be viewed on the dedicated package website: http://315xw6.wcbzw.com/
Use cases described there include the following:
- Using OntoTrace to obtain a character matrix
- 花猫影视ios在线看破解版下载-花猫影视苹果iPhone破解版 ...:2021-2-14 · 花猫影视ios破解版 应用类型：影音播放 软件版本：V1.0 文件大小：45.36MB 发布时间：2021-02-14 10:54:34 苹果下载 扫描二维码下载 应用截图 应用介绍 花猫视频苹果最新版是一款非常热门的手机看片神器，包罗海量视频资源，涵盖国内外影视大片 ...
- Subsetting matrices by taxonomic subgroup or anatomical part
- Searching for details for a given taxon
